HL_3JCJ_056

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3JCJ|1|A|A|2268, 3JCJ|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_056 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.124

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|C|2264
3JCJ|1|A|U|2265
3JCJ|1|A|A|2266
3JCJ|1|A|A|2267
3JCJ|1|A|A|2268
3JCJ|1|A|G|2269
3JCJ|1|A|A|2270
3JCJ|1|A|G|2271
3JCJ|1|A|U|2272
3JCJ|1|A|A|2273
3JCJ|1|A|A|2274
3JCJ|1|A|C|2275
3JCJ|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27