HL_3JCJ_057

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_057 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.225

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JCJ|1|A|G|2303
3JCJ|1|A|G|2304
3JCJ|1|A|U|2305
3JCJ|1|A|C|2306
3JCJ|1|A|G|2307
3JCJ|1|A|G|2308
3JCJ|1|A|A|2309
3JCJ|1|A|C|2310
3JCJ|1|A|A|2311
3JCJ|1|A|U|2312
3JCJ|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L5