HL_3JCJ_062

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_062 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1493

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JCJ|1|A|A|2471
3JCJ|1|A|G|2472
3JCJ|1|A|U|2473
3JCJ|1|A|U|2474
3JCJ|1|A|C|2475
3JCJ|1|A|A|2476
3JCJ|1|A|U|2477
3JCJ|1|A|A|2478
3JCJ|1|A|U|2479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain d

50S ribosomal protein L36

Chain f

Translation initiation factor IF-2