HL_3JCJ_063

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

3JCJ|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_063 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1177

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

3JCJ|1|A|U|2528
3JCJ|1|A|G|2529
3JCJ|1|A|A|2530
3JCJ|1|A|A|2531
3JCJ|1|A|G|2532
3JCJ|1|A|U|2533
3JCJ|1|A|A|2534
3JCJ|1|A|G|2535

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain d

50S ribosomal protein L36