HL_3JCJ_068

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3JCJ|1|A|G|2751, 3JCJ|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_068 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1263

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|C|2745
3JCJ|1|A|U|2746
3JCJ|1|A|G|2747
3JCJ|1|A|A|2748
3JCJ|1|A|A|2749
3JCJ|1|A|A|2750
3JCJ|1|A|G|2751
3JCJ|1|A|C|2752
3JCJ|1|A|A|2753
3JCJ|1|A|U|2754
3JCJ|1|A|C|2755
3JCJ|1|A|U|2756
3JCJ|1|A|A|2757
3JCJ|1|A|A|2758
3JCJ|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain d

50S ribosomal protein L36