HL_3JCJ_115

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

3JCJ|1|A|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_115 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3505

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

3JCJ|1|A|A|1532
3JCJ|1|A|C|1533
3JCJ|1|A|U|1534
3JCJ|1|A|A|1535
3JCJ|1|A|C|1536
3JCJ|1|A|G|1537
3JCJ|1|A|G|1538
3JCJ|1|A|U|1539

Current chains

Chain A

23S ribosomal RNA

Nearby chains