HL_3JCJ_116

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCUCGCGG

Length

9 nucleotides

Bulged bases

3JCJ|1|A|U|1729, 3JCJ|1|A|C|1730, 3JCJ|1|A|G|1731, 3JCJ|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_116 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3424

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JCJ|1|A|C|1726
3JCJ|1|A|C|1727
3JCJ|1|A|C|1728
3JCJ|1|A|U|1729
3JCJ|1|A|C|1730
3JCJ|1|A|G|1731
3JCJ|1|A|C|1732
3JCJ|1|A|G|1733
3JCJ|1|A|G|1734

Current chains

Chain A

23S ribosomal RNA

Nearby chains