HL_3JCN_023

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

3JCN|1|A|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_023 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.1805

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCN|1|A|G|778
3JCN|1|A|U|779
3JCN|1|A|G|780
3JCN|1|A|A|781
3JCN|1|A|A|782
3JCN|1|A|A|783
3JCN|1|A|G|784
3JCN|1|A|G|785
3JCN|1|A|C|786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2