HL_3JCN_036

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

3JCN|1|A|A|1453, 3JCN|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_036 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1986

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JCN|1|A|C|1451
3JCN|1|A|G|1452
3JCN|1|A|A|1453
3JCN|1|A|C|1454
3JCN|1|A|G|1455
3JCN|1|A|G|1456
3JCN|1|A|U|1457
3JCN|1|A|U|1458
3JCN|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17