HL_3JCN_066

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3JCN|1|A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0968

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JCN|1|A|C|2745
3JCN|1|A|U|2746
3JCN|1|A|G|2747
3JCN|1|A|A|2748
3JCN|1|A|A|2749
3JCN|1|A|A|2750
3JCN|1|A|G|2751
3JCN|1|A|C|2752
3JCN|1|A|A|2753
3JCN|1|A|U|2754
3JCN|1|A|C|2755
3JCN|1|A|U|2756
3JCN|1|A|A|2757
3JCN|1|A|A|2758
3JCN|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13