HL_3JCN_077

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3JCN|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_077 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1149

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JCN|1|a|G|259
3JCN|1|a|G|260
3JCN|1|a|U|261
3JCN|1|a|A|262
3JCN|1|a|A|263
3JCN|1|a|C|264
3JCN|1|a|G|265
3JCN|1|a|G|266
3JCN|1|a|C|267

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain x

30S ribosomal protein S20