HL_3JCN_107

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

3JCN|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_107 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2592

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JCN|1|A|G|381
3JCN|1|A|A|382
3JCN|1|A|C|383
3JCN|1|A|A|384
3JCN|1|A|C|385
3JCN|1|A|G|386
3JCN|1|A|U|387
3JCN|1|A|G|388
3JCN|1|A|G|389
3JCN|1|A|U|390
3JCN|1|A|A|391
3JCN|1|A|U|392
3JCN|1|A|C|393

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28