HL_3JCS_006
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGUUAGCC
- Length
- 9 nucleotides
- Bulged bases
- 3JCS|1|1|G|255, 3JCS|1|1|U|256, 3JCS|1|1|U|257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_006 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.183
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
3JCS|1|1|G|253
3JCS|1|1|U|254
3JCS|1|1|G|255
3JCS|1|1|U|256
3JCS|1|1|U|257
3JCS|1|1|A|258
3JCS|1|1|G|259
3JCS|1|1|C|260
3JCS|1|1|C|261
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- ribosomal protein L4
- Chain W
- ribosomal protein L24
Coloring options: