HL_3JCS_012
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCUUGA(A2M)AC(A2M)C
- Length
- 12 nucleotides
- Bulged bases
- 3JCS|1|1|C|680
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_012 not in the Motif Atlas
- Geometric match to HL_4V9I_040
- Geometric discrepancy: 0.3619
- The information below is about HL_4V9I_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67079.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JCS|1|1|G|671
3JCS|1|1|U|672
3JCS|1|1|C|673
3JCS|1|1|U|674
3JCS|1|1|U|675
3JCS|1|1|G|676
3JCS|1|1|A|677
3JCS|1|1|A2M|678
3JCS|1|1|A|679
3JCS|1|1|C|680
3JCS|1|1|A2M|681
3JCS|1|1|C|682
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- ribosomal protein L3
- Chain L
- ribosomal protein L15
- Chain f
- ribosomal protein L32e
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