Motif HL_67079.1 Version HL_67079.1 of this group appears in releases 3.96 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_223 | 8CRE | 0.5006 | 3 | CM | SSU rRNA | A | 1537 | U | 1538 | U | 1539 | G | 1540 | A | 1543 | U | 1544 | U | 1545 | U | 1547 | U | 1548 | cWW | ncWH | tWH |
| 2 | HL_8P9A_222 | 8P9A | 0.4851 | 3 | sR | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | A | 1556 | U | 1557 | U | 1558 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
| 3 | HL_4V7M_040 | 4V7M | 0.0000 | 2 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | A | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | ||
| 4 | HL_4V9I_040 | 4V9I | 0.3642 | 2 | AY | A-SITE tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 58 | A | 59 | C | 60 | C | 61 | G | 62 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGUAAUUGUU | 1 |
| AUUGUAAUUAUU | 1 |
| GGUUCGAAUCC | 1 |
| CAACUCUACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGUAAUUGU | 1 |
| UUGUAAUUAU | 1 |
| GUUCGAAUC | 1 |
| AACUCUACC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.38 | Max 0.79
Coloring options: