HL_3JCS_020

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

3JCS|1|1|C|1010, 3JCS|1|1|A|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCS_020 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.3018

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3JCS|1|1|C|1009
3JCS|1|1|C|1010
3JCS|1|1|U|1011
3JCS|1|1|C|1012
3JCS|1|1|A|1013
3JCS|1|1|G|1014

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain L

ribosomal protein L15