HL_3JCS_024
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 3JCS|1|1|A|1210, 3JCS|1|1|A|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_024 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.2185
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|G|1205
3JCS|1|1|A|1206
3JCS|1|1|A|1207
3JCS|1|1|U|1208
3JCS|1|1|G|1209
3JCS|1|1|A|1210
3JCS|1|1|A|1211
3JCS|1|1|C|1212
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5S ribosomal RNA; 5S rRNA
- Chain c
- ribosomal protein L30
- Chain f
- ribosomal protein L32e
- Chain g
- ribosomal protein L33e
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