HL_3JCS_030

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAUAUC

Length

8 nucleotides

Bulged bases

3JCS|1|1|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCS_030 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3039

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3JCS|1|1|G|1651
3JCS|1|1|U|1652
3JCS|1|1|U|1653
3JCS|1|1|A|1654
3JCS|1|1|U|1655
3JCS|1|1|A|1656
3JCS|1|1|U|1657
3JCS|1|1|C|1658

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain M

ribosomal protein L15e

Chain j

ribosomal protein L37e