HL_3JCS_048
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUACACGACAACG
- Length
- 13 nucleotides
- Bulged bases
- 3JCS|1|2|A|1065, 3JCS|1|2|C|1072
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38117.1
- Basepair signature
- cWW-tSH-tHH-tWW-R-R-R
- Number of instances in this motif group
- 15
Unit IDs
3JCS|1|2|U|1061
3JCS|1|2|U|1062
3JCS|1|2|A|1063
3JCS|1|2|C|1064
3JCS|1|2|A|1065
3JCS|1|2|C|1066
3JCS|1|2|G|1067
3JCS|1|2|A|1068
3JCS|1|2|C|1069
3JCS|1|2|A|1070
3JCS|1|2|A|1071
3JCS|1|2|C|1072
3JCS|1|2|G|1073
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5S ribosomal RNA; 5S rRNA
- Chain N
- ribosomal protein L16
- Chain S
- ribosomal protein L21e
- Chain b
- ribosomal protein L29e
Coloring options: