HL_3JCS_059
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCUUUCUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_059 not in the Motif Atlas
- Geometric match to HL_5TBW_037
- Geometric discrepancy: 0.327
- The information below is about HL_5TBW_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JCS|1|3|G|53
3JCS|1|3|C|54
3JCS|1|3|U|55
3JCS|1|3|U|56
3JCS|1|3|U|57
3JCS|1|3|C|58
3JCS|1|3|U|60
3JCS|1|3|U|61
Current chains
- Chain 3
- 26S gamma ribosomal RNA
Nearby chains
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- 26S epsilon ribosomal RNA
- Chain Q
- ribosomal protein L19e
- Chain U
- ribosomal protein L22e
- Chain e
- ribosomal protein L31e
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