HL_3JCS_062
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_062 not in the Motif Atlas
- Homologous match to HL_8C3A_067
- Geometric discrepancy: 0.2758
- The information below is about HL_8C3A_067
- Detailed Annotation
- Ribsomal LSU H95
- Broad Annotation
- Ribsomal LSU H95
- Motif group
- HL_65794.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
3JCS|1|4|C|96
3JCS|1|4|G|97
3JCS|1|4|A|98
3JCS|1|4|A|99
3JCS|1|4|C|100
3JCS|1|4|G|101
Current chains
- Chain 4
- 26S delta ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain 5
- 26S epsilon ribosomal RNA
- Chain Q
- ribosomal protein L19e
- Chain e
- ribosomal protein L31e
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