HL_3JCS_067
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGUAAAGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_067 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.22
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
3JCS|1|7|C|47
3JCS|1|7|A|48
3JCS|1|7|G|49
3JCS|1|7|U|50
3JCS|1|7|A|51
3JCS|1|7|A|52
3JCS|1|7|A|53
3JCS|1|7|G|54
3JCS|1|7|U|55
3JCS|1|7|G|56
Current chains
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain V
- ribosomal protein L23
- Chain a
- ribosomal protein L29
- Chain j
- ribosomal protein L37e
- Chain l
- ribosomal protein L39e
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