HL_3JCS_073
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (OMU)AAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 3JCS|1|1|A|38, 3JCS|1|1|A|41
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_073 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.1209
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
3JCS|1|1|OMU|36
3JCS|1|1|A|37
3JCS|1|1|A|38
3JCS|1|1|G|39
3JCS|1|1|C|40
3JCS|1|1|A|41
3JCS|1|1|U|42
3JCS|1|1|A|43
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- ribosomal protein L13e
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain n
- ribosomal protein L44e
Coloring options: