HL_3JCS_076
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (OMU)CCAGUA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_076 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.186
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|2|OMU|1153
3JCS|1|2|C|1154
3JCS|1|2|C|1155
3JCS|1|2|A|1156
3JCS|1|2|G|1157
3JCS|1|2|U|1158
3JCS|1|2|A|1159
3JCS|1|2|OMC|1160
3JCS|1|2|G|1161
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- ribosomal protein L15
- Chain P
- ribosomal protein L18e
- Chain S
- ribosomal protein L21e
- Chain n
- ribosomal protein L44e
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