HL_3MJ3_001

3D structure

PDB id

3MJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUAGGUAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3MJ3_001 not in the Motif Atlas

Geometric match to HL_3MJA_001

Geometric discrepancy: 0.0569

The information below is about HL_3MJA_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_41019.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3MJ3|1|B|A|6184
3MJ3|1|B|U|6185
3MJ3|1|B|U|6186
3MJ3|1|B|A|6187
3MJ3|1|B|G|6188
3MJ3|1|B|G|6189
3MJ3|1|B|U|6190
3MJ3|1|B|A|6191
3MJ3|1|B|G|6192
3MJ3|1|B|U|6193

Current chains

Chain B

Domain 3 of the cricket paralysis virus intergenic region IRES RNA

Nearby chains

Chain C

RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')