HL_3MJB_001

3D structure

PDB id

3MJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUUAGGUAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3MJB_001 not in the Motif Atlas

Geometric match to HL_3MJA_001

Geometric discrepancy: 0.04

The information below is about HL_3MJA_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_41019.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3MJB|1|A|A|6184
3MJB|1|A|U|6185
3MJB|1|A|U|6186
3MJB|1|A|A|6187
3MJB|1|A|G|6188
3MJB|1|A|G|6189
3MJB|1|A|U|6190
3MJB|1|A|A|6191
3MJB|1|A|G|6192
3MJB|1|A|U|6193

Current chains

Chain A

Domain 3 of the cricket paralysis virus intergenic region IRES RNA

Nearby chains

Chain B

RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')