HL_3PDR_006

3D structure

PDB id

3PDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of manganese bound M-box RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.85 Å

Loop

Sequence

GAUGCUUGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14875.1

Basepair signature

cWW-cWW-R-R-R-R-R

Number of instances in this motif group

3

Unit IDs

3PDR|1|A|G|127
3PDR|1|A|A|128
3PDR|1|A|U|129
3PDR|1|A|G|130
3PDR|1|A|C|131
3PDR|1|A|U|132
3PDR|1|A|U|133
3PDR|1|A|G|134
3PDR|1|A|U|135
3PDR|1|A|C|136

Current chains

Chain A

M-box Riboswitch RNA

Nearby chains