Motif HL_14875.1 Version HL_14875.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3T4B_003 | 3T4B | 0.3160 | 0 | A | HCV IRES pseudoknot domain plus crystallization module | C | 304 | U | 305 | U | 306 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | ncWw |
| 2 | HL_5A2Q_038 | 5A2Q | 0.0000 | 0 | 3 | IRES | C | 304 | U | 305 | U | 306 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | cwW |
| 3 | HL_3PDR_006 | 3PDR | 0.7477 | 0 | A | M-box riboswitch (ykoK leader) | G | 127 | A | 128 | U | 129 | G | 130 | C | 131 | U | 132 | U | 133 | G | 134 | U | 135 | C | 136 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGCGAGUG | 2 |
| GAUGCUUGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCGAGU | 2 |
| AUGCUUGU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.32 | Avg 0.42 | Max 0.82
Coloring options: