HL_3PIO_009
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUGGAAAG
- Length
- 8 nucleotides
- Bulged bases
- 3PIO|1|X|A|322
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3PIO_009 not in the Motif Atlas
- Homologous match to HL_7A0S_010
- Geometric discrepancy: 0.2049
- The information below is about HL_7A0S_010
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_13999.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
3PIO|1|X|C|316
3PIO|1|X|U|317
3PIO|1|X|G|318
3PIO|1|X|G|319
3PIO|1|X|A|320
3PIO|1|X|A|321
3PIO|1|X|A|322
3PIO|1|X|G|323
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain P
- 50S ribosomal protein L22
- Chain R
- 50S ribosomal protein L24
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