HL_3PIO_015

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

3PIO|1|X|U|554, 3PIO|1|X|U|555, 3PIO|1|X|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_015 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.37

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

3PIO|1|X|C|552
3PIO|1|X|C|553
3PIO|1|X|U|554
3PIO|1|X|U|555
3PIO|1|X|A|556
3PIO|1|X|U|557
3PIO|1|X|G|558
3PIO|1|X|C|559
3PIO|1|X|G|560

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain O

50S ribosomal protein L21