HL_3PIO_017

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

3PIO|1|X|A|625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_017 not in the Motif Atlas

Geometric match to HL_7A0S_019

Geometric discrepancy: 0.2736

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

3PIO|1|X|U|622
3PIO|1|X|G|623
3PIO|1|X|A|624
3PIO|1|X|A|625
3PIO|1|X|A|626
3PIO|1|X|A|627

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4