HL_3PIO_025

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

3PIO|1|X|U|969, 3PIO|1|X|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_025 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1377

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

3PIO|1|X|A|966
3PIO|1|X|G|967
3PIO|1|X|C|968
3PIO|1|X|U|969
3PIO|1|X|A|970
3PIO|1|X|A|971
3PIO|1|X|C|972
3PIO|1|X|U|973

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain Y

5S ribosomal RNA; 5S rRNA