HL_3PIO_029

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AACUCGGAGUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_029 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3226

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

3PIO|1|X|A|1179
3PIO|1|X|A|1180
3PIO|1|X|C|1181
3PIO|1|X|U|1182
3PIO|1|X|C|1183
3PIO|1|X|G|1184
3PIO|1|X|G|1191
3PIO|1|X|A|1192
3PIO|1|X|G|1193
3PIO|1|X|U|1194
3PIO|1|X|U|1195

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains