HL_3PIO_044

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

3PIO|1|X|A|1771, 3PIO|1|X|C|1772, 3PIO|1|X|C|1773, 3PIO|1|X|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_044 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1563

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

3PIO|1|X|G|1767
3PIO|1|X|U|1768
3PIO|1|X|U|1769
3PIO|1|X|U|1770
3PIO|1|X|A|1771
3PIO|1|X|C|1772
3PIO|1|X|C|1773
3PIO|1|X|A|1774
3PIO|1|X|A|1775
3PIO|1|X|A|1776
3PIO|1|X|A|1777
3PIO|1|X|U|1778
3PIO|1|X|C|1779

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2