HL_3PIO_052

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

3PIO|1|X|A|2247, 3PIO|1|X|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1279

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3PIO|1|X|C|2243
3PIO|1|X|C|2244
3PIO|1|X|A|2245
3PIO|1|X|A|2246
3PIO|1|X|A|2247
3PIO|1|X|A|2248
3PIO|1|X|U|2249
3PIO|1|X|G|2250
3PIO|1|X|U|2251
3PIO|1|X|A|2252
3PIO|1|X|A|2253
3PIO|1|X|C|2254
3PIO|1|X|G|2255

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA