HL_3PIO_053

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

3PIO|1|X|U|2285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_053 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.5983

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3PIO|1|X|G|2282
3PIO|1|X|G|2283
3PIO|1|X|U|2284
3PIO|1|X|U|2285
3PIO|1|X|G|2286
3PIO|1|X|G|2287
3PIO|1|X|A|2288
3PIO|1|X|A|2289
3PIO|1|X|A|2290
3PIO|1|X|U|2291
3PIO|1|X|C|2292

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain D

50S ribosomal protein L5