HL_3PIO_054

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_054 not in the Motif Atlas

Geometric match to HL_7A0S_055

Geometric discrepancy: 0.1688

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

3PIO|1|X|C|2303
3PIO|1|X|G|2304
3PIO|1|X|C|2305
3PIO|1|X|A|2306
3PIO|1|X|A|2307
3PIO|1|X|A|2308
3PIO|1|X|G|2309
3PIO|1|X|G|2310

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain T

50S ribosomal protein L27