HL_3PIO_059

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

3PIO|1|X|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_059 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1057

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3PIO|1|X|U|2507
3PIO|1|X|G|2508
3PIO|1|X|A|2509
3PIO|1|X|A|2510
3PIO|1|X|G|2511
3PIO|1|X|A|2512
3PIO|1|X|A|2513
3PIO|1|X|G|2514

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6