HL_3PIO_072

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUCCUCGGAAG

Length

12 nucleotides

Bulged bases

3PIO|1|X|U|1551, 3PIO|1|X|C|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_072 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3098

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

3PIO|1|X|C|1546
3PIO|1|X|U|1547
3PIO|1|X|U|1548
3PIO|1|X|C|1549
3PIO|1|X|C|1550
3PIO|1|X|U|1551
3PIO|1|X|C|1552
3PIO|1|X|G|1553
3PIO|1|X|G|1554
3PIO|1|X|A|1555
3PIO|1|X|A|1556
3PIO|1|X|G|1557

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains