HL_3PIO_077

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3PIO|1|X|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_077 not in the Motif Atlas

Homologous match to HL_9DFE_047

Geometric discrepancy: 0.1862

The information below is about HL_9DFE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3PIO|1|X|G|1932
3PIO|1|X|G|1933
3PIO|1|X|U|1934
3PIO|1|X|A|1935
3PIO|1|X|A|1936
3PIO|1|X|G|1937
3PIO|1|X|U|1938
3PIO|1|X|U|1939
3PIO|1|X|C|1940

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain H

50S ribosomal protein L14