HL_3R1L_008
3D structure
- PDB id
- 3R1L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CAUUGCACUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3R1L_008 not in the Motif Atlas
- Geometric match to HL_3HHN_008
- Geometric discrepancy: 0.0567
- The information below is about HL_3HHN_008
- Detailed Annotation
- U1 small nuclear ribonucleoprotein A binding hairpin
- Broad Annotation
- No text annotation
- Motif group
- HL_36992.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
3R1L|1|F|C|1004
3R1L|1|F|A|1005
3R1L|1|F|U|1006
3R1L|1|F|U|1007
3R1L|1|F|G|1008
3R1L|1|F|C|1009
3R1L|1|F|A|1010
3R1L|1|F|C|1011
3R1L|1|F|U|1012
3R1L|1|F|C|1013
3R1L|1|F|C|1014
3R1L|1|F|G|1015
Current chains
- Chain F
- Class I ligase ribozyme
Nearby chains
- Chain C
- Class I ligase ribozyme
- Chain D
- U1 small nuclear ribonucleoprotein A
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