HL_3SKI_005

3D structure

PDB id

3SKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GACCCCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3SKI_005 not in the Motif Atlas

Geometric match to HL_3SKL_005

Geometric discrepancy: 0.1304

The information below is about HL_3SKL_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

3SKI|1|B|G|53
3SKI|1|B|A|54
3SKI|1|B|C|55
3SKI|1|B|C|56
3SKI|1|B|C|57
3SKI|1|B|C|58
3SKI|1|B|G|59
3SKI|1|B|C|60

Current chains

Chain B

RNA (68-MER)

Nearby chains