HL_3SKL_004

3D structure

PDB id

3SKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 2'- deoxyguanosine riboswitch bound to 2'-deoxyguanosine, iridium hexammine soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUAAUGGG

Length

9 nucleotides

Bulged bases (A, C, G, U)

43U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86769.3

Basepair signature

cWW-F-cSS-cSH

Number of instances in this motif group

6

Unit IDs

3SKL|1|B|C|38
3SKL|1|B|A|39
3SKL|1|B|U|40
3SKL|1|B|A|41
3SKL|1|B|A|42
3SKL|1|B|U|43
3SKL|1|B|G|44
3SKL|1|B|G|45
3SKL|1|B|G|46

Current chains

Chain B

RNA (66-MER)

Nearby chains