3SKL | Motifs

Loop id	Location	Annotation; motif group	Mapped info
HL_3SKL_001	1/A/38:46	No text annotation	geometric HL_3SKI_001 HL_20743.5
HL_3SKL_002	1/A/52:59	Pseudoknot geometry	geometric HL_3SKL_005 HL_93324.4
HL_3SKL_003	1/A/66:71	No text annotation	geometric HL_3SKI_003 HL_48417.5
HL_3SKL_004	1/B/38:46	No text annotation HL_20743.5
HL_3SKL_005	1/B/52:59	Pseudoknot geometry HL_93324.4
HL_3SKL_007	1/B/66:71	No text annotation HL_48417.5

#	loop id	Problem	Sequence
	HL_3SKL_006	Deprecated	No text annotation

Loop id	Location	Annotation; motif group	Mapped info
J3_3SKL_001	1/A/29:33, 1/A/51:60, 1/A/77:80	No text annotation	geometric J3_3SKL_002 J3_44163.2
J3_3SKL_002	1/B/29:33, 1/B/51:60, 1/B/77:80	No text annotation J3_44163.2
J4_3SKL_001	1/A/29:33, 1/A/51:52, 1/A/59:60, 1/A/77:80	No text annotation
J4_3SKL_002	1/B/29:33, 1/B/51:52, 1/B/59:60, 1/B/77:80	Purine riboswitch J4_07491.2

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Coloring options: Nucleotide numbers

3SKL Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops