HL_3UD4_002

3D structure

PDB id

3UD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The C92U mutant c-di-GMP-I riboswitch bound to GpA

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

3UD4|1|R|C|664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3UD4_002 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.076

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3UD4|1|R|C|65
3UD4|1|R|A|660
3UD4|1|R|U|661
3UD4|1|R|U|662
3UD4|1|R|G|663
3UD4|1|R|C|664
3UD4|1|R|A|665
3UD4|1|R|C|666
3UD4|1|R|U|667
3UD4|1|R|C|668
3UD4|1|R|C|669
3UD4|1|R|G|75

Current chains

Chain R

RNA (92-MER)

Nearby chains

Chain P

U1 small nuclear ribonucleoprotein A