HL_486D_005
3D structure
- PDB id
- 486D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.5 Å
Loop
- Sequence
- C(PSU)UGUC(1MG)CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, 1MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_486D_005 not in the Motif Atlas
- Homologous match to HL_6ORD_036
- Geometric discrepancy: 0.3754
- The information below is about HL_6ORD_036
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 47
Unit IDs
486D|1|C|C|31
486D|1|C|PSU|32
486D|1|C|U|33
486D|1|C|G|34
486D|1|C|U|35
486D|1|C|C|36
486D|1|C|1MG|37
486D|1|C|C|38
486D|1|C|G|39
Current chains
- Chain C
- A-SITE TRNA OF 70S RIBOSOME
Nearby chains
- Chain B
- P-SITE CODON OF 70S RIBOSOME
- Chain D
- A-SITE CODON OF 70S RIBOSOME
- Chain F
- PENULTIMATE STEM OF 16S RRNA IN THE 70S RIBOSOME
Coloring options: