HL_486D_011
3D structure
- PDB id
- 486D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.5 Å
Loop
- Sequence
- GA(OMC)UGAA(YYG)AU(5MC)
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, YYG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_486D_011 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.447
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
486D|1|A|G|30
486D|1|A|A|31
486D|1|A|OMC|32
486D|1|A|U|33
486D|1|A|G|34
486D|1|A|A|35
486D|1|A|A|36
486D|1|A|YYG|37
486D|1|A|A|38
486D|1|A|U|39
486D|1|A|5MC|40
Current chains
- Chain A
- P-SITE TRNA OF 70S RIBOSOME
Nearby chains
- Chain B
- P-SITE CODON OF 70S RIBOSOME
- Chain E
- Transfer RNA; tRNA
- Chain F
- PENULTIMATE STEM OF 16S RRNA IN THE 70S RIBOSOME
Coloring options: