HL_4A2I_016

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4A2I_016 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0915

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4A2I|1|A|C|726
4A2I|1|A|G|727
4A2I|1|A|A|728
4A2I|1|A|A|729
4A2I|1|A|G|730
4A2I|1|A|G|731

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18