HL_4A2I_028

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4A2I_028 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1146

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4A2I|1|A|C|1265
4A2I|1|A|G|1266
4A2I|1|A|C|1267
4A2I|1|A|G|1268
4A2I|1|A|A|1269
4A2I|1|A|G|1270

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain M

30S RIBOSOMAL PROTEIN S13