HL_4ADV_006

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4ADV|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ADV_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1152

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4ADV|1|A|G|259
4ADV|1|A|G|260
4ADV|1|A|U|261
4ADV|1|A|A|262
4ADV|1|A|A|263
4ADV|1|A|C|264
4ADV|1|A|G|265
4ADV|1|A|G|266
4ADV|1|A|C|267

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20